Continuing the trademark of the series, ''Beginning of the End'' is divided into eight segments presented in an anachronistic order, each titled after a character central to that segment. They are, in the following order: Yui (結衣), Nanami (七海), Kayako (伽椰子), Yayoi (弥生), Rina (莉奈), Aoi (葵), Naoto (直人), and Toshio (俊雄). The synopsis presents a rough chronology of the film's plot.